{"id":11021,"date":"2021-10-20T13:22:30","date_gmt":"2021-10-20T10:22:30","guid":{"rendered":"http:\/\/kaplanlab.com\/?p=11021"},"modified":"2021-11-02T22:09:11","modified_gmt":"2021-11-02T19:09:11","slug":"publications","status":"publish","type":"post","link":"http:\/\/kaplanlab.com\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<div class=\"fusion-fullwidth fullwidth-box fusion-builder-row-1 nonhundred-percent-fullwidth non-hundred-percent-height-scrolling\"  style='background-color: rgba(255,255,255,0);background-position: center center;background-repeat: no-repeat;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px;'><div class=\"fusion-builder-row fusion-row \"><div  class=\"fusion-layout-column fusion_builder_column fusion_builder_column_1_1 fusion-builder-column-1 fusion-one-full fusion-column-first fusion-column-last 1_1\"  style='margin-top:0px;margin-bottom:20px;'>\n\t\t\t\t\t<div class=\"fusion-column-wrapper\" style=\"padding: 0px 0px 0px 0px;background-position:left top;background-repeat:no-repeat;-webkit-background-size:cover;-moz-background-size:cover;-o-background-size:cover;background-size:cover;\"   data-bg-url=\"\">\n\t\t\t\t\t\t<style type=\"text\/css\"><\/style><div class=\"fusion-title title fusion-title-1 fusion-sep-none fusion-title-center fusion-title-text fusion-title-size-two\" style=\"margin-top:0px;margin-bottom:31px;\"><h2 class=\"title-heading-center\" style=\"margin:0;\">Publications<\/h2><\/div><div class=\"fusion-text\"><p style=\"font-weight: 400;\"><strong>PRE-PRINT PUBLICATIONS<\/strong><\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\">2021\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Cevik S, Alabdi L, Pneg X, Beyer T, ZOrluer A, Pir MS, Yenisert F, Shaheen R, Woerz F, HoffamannF, Altunkaynak B, Pir B, Boldt K, Karaman A, Cakiroglu M, Oner SS, Cao Y, Ueffing M, Alkuraya FS,\u00a0<strong><u>Kaplan OI,<\/u><\/strong><strong>\u00a0<\/strong>WDR31 is a novel ciliopathy protein displaying functional redundancy with GTPase-activating proteins ELMOD and RP2 in recruiting BBSome to cilium; bioRxiv 2021.06.10.445528; doi:\u00a0<a href=\"https:\/\/doi.org\/10.1101\/2021.06.10.445528\" data-saferedirecturl=\"https:\/\/www.google.com\/url?q=https:\/\/doi.org\/10.1101\/2021.06.10.445528&amp;source=gmail&amp;ust=1635963287301000&amp;usg=AFQjCNFMdiMJH2xa7rnrPqBOWxgGKKlkhg\">https:\/\/doi.org\/10.1101\/2021.06.10.445528<\/a><\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\"><strong>PEER-REVIEWED PUBLICATIONS FROM THE LAB<\/strong><\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\">2021\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 MS Pir, HI Bilgin, A Sayici, F Coskun, FM Torun, P Zhao, Y Kang, S Cevik,\u00a0<strong><u>Kaplan OI,\u00a0<\/u><\/strong>ConVarT: a search engine for matching human genetic variants with variants from non-human species,\u00a0<strong><em>Nucleic Acids Res<\/em><\/strong>\u00a0(Accepted) Deposited to bioRxiv 2021.01.07.424951; doi:\u00a0<a href=\"https:\/\/doi.org\/10.1101\/2021.01.07.424951\" data-saferedirecturl=\"https:\/\/www.google.com\/url?q=https:\/\/doi.org\/10.1101\/2021.01.07.424951&amp;source=gmail&amp;ust=1635963287301000&amp;usg=AFQjCNGAnZOLBXiddX48E6wUVwHh445efA\">https:\/\/doi.org\/10.1101\/2021.01.07.424951<\/a><\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\">\u00a02021\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Torun MF, Bilgin,\u00a0<strong><u>Kaplan OI,<\/u><\/strong><strong>\u00a0<\/strong>MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations,\u00a0<strong><em>Bioinformatics Advances\u00a0<\/em><\/strong>(Accepted)<strong><em>.\u00a0<\/em><\/strong>Deposited to bioRxiv 2021.04.05.426321; doi:\u00a0<a href=\"https:\/\/doi.org\/10.1101\/2021.04.05.426321\" data-saferedirecturl=\"https:\/\/www.google.com\/url?q=https:\/\/doi.org\/10.1101\/2021.04.05.426321&amp;source=gmail&amp;ust=1635963287301000&amp;usg=AFQjCNEK8GiVVlJhDjKzc4ed4RMGir8BlQ\">https:\/\/doi.org\/10.1101\/2021.04.05.426321<\/a><\/p>\n<p style=\"font-weight: 400;\">2021\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Cevik,\u00a0<strong><u>Kaplan OI,<\/u><\/strong><strong>\u00a0<\/strong>The Joubert syndrome protein CEP41 is excluded from the distal segment of cilia in\u00a0<em>C. elegans,<\/em>\u00a0<strong><em>microPublication Biology,\u00a0<\/em><\/strong><a href=\"https:\/\/doi.org\/10.17912\/micropub.biology.000406\" data-saferedirecturl=\"https:\/\/www.google.com\/url?q=https:\/\/doi.org\/10.17912\/micropub.biology.000406&amp;source=gmail&amp;ust=1635963287301000&amp;usg=AFQjCNEvBJp_afWv1Zj0DUozTpAxBt0cMw\">https:\/\/doi.org\/10.17912\/micropub.biology.000406<\/a><\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\">2021\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Cevik S,\u00a0<strong><u>Kaplan OI,<\/u><\/strong><strong>\u00a0<\/strong>Subcellular localization of the voltage-gated K+ channel EGL-36, a member of the KV3 subfamily, in the ciliated sensory neurons in\u00a0<em>C. elegans<\/em>,\u00a0<strong><em>microPublication Biology<\/em><\/strong><em>.\u00a0<\/em>10.17912\/micropub.biology.000367 .<\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\"><strong>PEER-REVIEWED PUBLICATIONS<\/strong><\/p>\n<p style=\"font-weight: 400;\">2018\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0Kimura Y, Tsutsumi K, Konno A, Ikegami K, Hameed S, Kaneko T,\u00a0<strong><u>Kaplan OI,<\/u><\/strong>\u00a0Teramoto T, Fujiwara M, Ishihara T, Blacque OE,&amp;Setou M,\u00a0Environmental responsiveness of tubulin glutamylation in sensory cilia is regulated by the p38 MAPK pathway,\u00a0<strong><em>Scientific Reports<\/em><\/strong>.<\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\">2016\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0<strong><u>Kaplan OI<\/u><\/strong>, Berber B, Hekim N\u00a0&amp;\u00a0Doluca O G-quadruplex prediction in\u00a0<em>E. coli<\/em>\u00a0genome reveals a conserved putative-quadruplex-Hairpin-Duplex switch,\u00a0<strong><em>Nucleic Acids Res<\/em><\/strong>. 2016 Sep 4. pii: gkw769<\/p>\n<p style=\"font-weight: 400;\">2013\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Cevik S,\u00a0Sanders AA, Van Wij E,\u00a0<sup>\u00a0<\/sup>Boldt K, , Clarke L, van Reeuwijk J, Hori Y, Horn N, Hetterschijt N, Wdowicz A, Mullins A, Kida K,\u00a0<strong><u>Kaplan OI,<\/u><\/strong>\u00a0C. van Beersum SE, Man Wu K, Letteboer SFJ, Mans DA, Katada T, Kontani K, Ueffing M, Roepman R, Kremer H &amp; Blacque OE,\u00a0Active transport and diffusion barriers restrict Joubert Syndrome-associated ARL13B\/ARL-13 to an Inv-like ciliary membrane subdomain,\u00a0<strong><em>Plos Genetics<\/em><\/strong><strong><em>;\u00a0<\/em><\/strong><strong>9<\/strong>(12): e1003977. doi:10.1371\/journal.pgen.1003977<\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\">2012<strong>\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0<u>Kaplan OI<\/u><\/strong><strong>*<\/strong>, Doroques D<strong>*<\/strong>, Cevik S, Bowie RV, Clarke L, Sanders AA, Kida K Sengupta P&amp;Blacque OE,\u00a0Endocytosis facilitates proteins and membrane transport to\u00a0<em>C. elegans\u00a0<\/em>sensory cilia,\u00a0<strong><em>Current Biology;<\/em><\/strong><strong>\u00a0* Authors contributed equally ,\u00a0<\/strong><a href=\"http:\/\/www.sciencedirect.com\/science\/journal\/09609822\/22\/6\" data-saferedirecturl=\"https:\/\/www.google.com\/url?q=http:\/\/www.sciencedirect.com\/science\/journal\/09609822\/22\/6&amp;source=gmail&amp;ust=1635963287301000&amp;usg=AFQjCNG8UeMMhhkrfSePlaZlz9XLGDMx8A\"><strong>Volume 22<\/strong>, Issue 6<\/a>, Pages 451\u2013460<\/p>\n<p style=\"font-weight: 400;\">2010\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0<strong><u>Kaplan OI<\/u><\/strong>\u00a0, Molla-Herman A, Cevik S, Ghossoub R, Kida K, Kimura Y, Jenkins P, Martens JR,\u00a0 Setou M, Benmerah A &amp; Blacque OE,\u00a0 AP-1 adaptor facilitates cilium formation and functions with RAB-8 in\u00a0<em>C. elegans<\/em>\u00a0ciliary membrane transport,\u00a0<strong><em>Journal of Cell Science<\/em><\/strong><strong>\u00a0\u00a0<\/strong>;<strong>123<\/strong>(Pt 22):3966-77.<\/p>\n<p style=\"font-weight: 400;\">2010\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0Kimura Y,<sup>\u00a0<\/sup>Ikegami K, Kurabe N, Tsutsumi K,<sup>\u00a0<\/sup>\u00a0Konishi Y,\u00a0<strong><u>Kaplan OI<\/u><\/strong>, Kunitomo H, Iino Y, Blacque OE<sup>\u00a0<\/sup>and Setou M, Bidirectional tubulin modification by glutamylase TTLL-4 and deglutamylase CPH-1 in sensory cilia<strong>,\u00a0<\/strong><strong>\u00a0<\/strong><strong><em>Journal of Biological Chem<\/em><\/strong><strong><em>istry<\/em><\/strong><em>;\u00a0<\/em>Jul 23;<strong>285<\/strong>(30):22936-41<\/p>\n<p style=\"font-weight: 400;\"><strong>\u00a0<\/strong><\/p>\n<p style=\"font-weight: 400;\">2010\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0Cevik S, Hori Y,\u00a0<strong><u>Kaplan OI,<\/u><\/strong>\u00a0\u00a0Kida K,\u00a0\u00a0Toivenon T, Cottell D, Katada T,\u00a0 Kontani K&amp; Blacque OE, Joubert Syndrome Arl13b functions at ciliary membranes and stabilizes protein transport in\u00a0<em>C. Elegans,<\/em><strong><em>\u00a0<\/em><\/strong><em>\u00a0<\/em><em><strong>Journal of Cell Biology<\/strong><\/em><em>,<strong>\u00a0<\/strong><\/em>;<strong>188<\/strong>(6):953-69.<\/p>\n<p style=\"font-weight: 400;\">2008\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0Blacque OE., Cevik S,\u00a0<strong><u>Kaplan OI<\/u><\/strong><u>,<\/u>\u00a0Intraflagellar transport: from molecular characterisation to mechanism,\u00a0<em><strong>Frontiers in Bioscience,\u00a0<\/strong><\/em><strong>13<\/strong>:2633-52.<\/p>\n<\/div><div class=\"fusion-clearfix\"><\/div>\n\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div><\/div><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v19.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Publications - Kaplan Lab<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"http:\/\/kaplanlab.com\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"tr_TR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications - Kaplan Lab\" \/>\n<meta property=\"og:url\" content=\"http:\/\/kaplanlab.com\/publications\/\" \/>\n<meta property=\"og:site_name\" content=\"Kaplan Lab\" \/>\n<meta property=\"article:published_time\" content=\"2021-10-20T10:22:30+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2021-11-02T19:09:11+00:00\" \/>\n<meta name=\"author\" content=\"kaplanadmin\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Yazan:\" \/>\n\t<meta name=\"twitter:data1\" content=\"kaplanadmin\" \/>\n\t<meta name=\"twitter:label2\" content=\"Tahmini okuma s\u00fcresi\" \/>\n\t<meta name=\"twitter:data2\" content=\"5 dakika\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"http:\/\/kaplanlab.com\/publications\/#article\",\"isPartOf\":{\"@id\":\"http:\/\/kaplanlab.com\/publications\/\"},\"author\":{\"name\":\"kaplanadmin\",\"@id\":\"http:\/\/kaplanlab.com\/#\/schema\/person\/5408d819af49ce3a60760c834e69f6c5\"},\"headline\":\"Publications\",\"datePublished\":\"2021-10-20T10:22:30+00:00\",\"dateModified\":\"2021-11-02T19:09:11+00:00\",\"mainEntityOfPage\":{\"@id\":\"http:\/\/kaplanlab.com\/publications\/\"},\"wordCount\":987,\"commentCount\":0,\"publisher\":{\"@id\":\"http:\/\/kaplanlab.com\/#organization\"},\"articleSection\":[\"General\"],\"inLanguage\":\"tr\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"http:\/\/kaplanlab.com\/publications\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"http:\/\/kaplanlab.com\/publications\/\",\"url\":\"http:\/\/kaplanlab.com\/publications\/\",\"name\":\"Publications - 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