Publications




Kimura Y , Tsutsumi K, Konno A , Ikegami K, Hameed S, Kaneko T, Kaplan OI, Teramoto T, Fujiwara M , Ishihara T , Blacque OE,& Setou M, Environmental responsiveness of tubulin glutamylation in sensory cilia is regulated by the p38 MAPK pathway, Scientific Reports, 2018
https://www.nature.com/articles/s41598-018-26694-w

Kaplan OI, Berber B, Hekim N, Doluca O, (2016) G-quadruplex prediction in E. coli genome reveals a conserved putative G-quadruplex-Hairpin-Duplex switch. Nucleic Acids Res. 2;44(19):9083-9095

Cevik S, Sanders AA, Van Wij E, Boldt K, , Clarke L, van Reeuwijk J, Hori Y, Horn N, Hetterschijt N, Wdowicz A, Mullins A, Kida K, Kaplan OI, C. van Beersum SE, Man Wu K, Letteboer SFJ, Mans DA, Katada T, Kontani K, Ueffing M, Roepman R, Kremer H & Blacque OE.(2013) Active transport and diffusion barriers restrict Joubert Syndrome-associated ARL13B/ARL-13 to an Inv-like ciliary membrane subdomain, Plos Genetics.

Kaplan OI*, Doroques D*, Cevik S, Bowie RV, Clarke L, Sanders AA, Kida K Sengupta P&Blacque OE, (2012) Endocytosis facilitates proteins and membrane transport to C. elegans sensory cilia, Current Biology * Authors contributed equally, Volume 22, Issue 6, Pages 451–460

Kaplan OI , Molla-Herman A, Cevik S, Ghossoub R, Kida K, Kimura Y, Jenkins P, Martens JR, Setou M, Benmerah A & Blacque OE, (2010) AP-1 adaptor facilitates cilium formation and functions with RAB-8 in C. elegans ciliary membrane transport, Journal of Cell Science ;123(Pt 22):3966-77.

Kimura Y, Ikegami K, Kurabe N, Tsutsumi K, Konishi Y, Kaplan OI, Kunitomo H, Iino Y, Blacque OE and Setou M, (2010) Bidirectional tubulin modification by glutamylase TTLL-4 and deglutamylase CPH-1 in sensory cilia, Journal of Biological Chemistry; Jul 23;285(30):22936-41 (selected as a paper of the week)

Cevik S, Hori Y, Kaplan OI, Kida K, Toivenon T, Cottell D, Katada T, Kontani K& Blacque OE, (2010) Joubert Syndrome Arl13b functions at ciliary membranes and stabilizes protein transport in C. elegans , Journal of Cell Biology, ;188(6):953-69.

Blacque OE., Cevik S, Kaplan OI, (2008) Intraflagellar transport: from molecular characterisation to mechanism, Frontiers in Bioscience, 13:2633-52.

Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, Ayivi-Guedehoussou N, Dann E, Bertin N, Szeto D, Dricot A, Yildirim MA, Lin C, de Smet AS, Kao HL, Simon C, Smolyar A, Ahn JS, Tewari M, Boxem M, Milstein S, Yu H, Dreze M, Vandenhaute J, Gunsalus KC, Cusick ME, Hill DE, Tavernier J, Roth FP, Vidal M. (2009) Nat Methods., Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.) (1):47-54.

Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S, Simon C, de Smet AS, Dann E, Smolyar A, Vinayagam A, Yu H, Szeto D, Borick H, Dricot A, Klitgord N, Murray RR, Lin C, Lalowski M, Timm J, Rau K, Boone C, Braun P, Cusick ME, Roth FP, Hill DE, Tavernier J, Wanker EE, Barabási AL, Vidal M. (2009) Nat Methods, 6(1):83-90.

Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M. (2009). Nature, 20;437(7062):1173-8